IL_8PJ1_087

3D structure

PDB id

8PJ1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of human 48S translation initiation complex in open codon scanning state (48S-1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

GGGAUCG*CAUGAAC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8PJ1_087 not in the Motif Atlas

Homologous match to IL_8C3A_469

Geometric discrepancy: 0.1285

The information below is about IL_8C3A_469

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_10092.1

Basepair signature

cWW-tSH-tSH-L-R-cWW-L-R-cWW

Number of instances in this motif group

1

Unit IDs

8PJ1|1|A|G|1604
8PJ1|1|A|G|1605
8PJ1|1|A|G|1606
8PJ1|1|A|A|1607
8PJ1|1|A|U|1608
8PJ1|1|A|C|1609
8PJ1|1|A|G|1610
*
8PJ1|1|A|C|1629
8PJ1|1|A|A|1630
8PJ1|1|A|U|1631
8PJ1|1|A|G|1632
8PJ1|1|A|A|1633
8PJ1|1|A|A|1634
8PJ1|1|A|C|1635

Current chains

Chain A

18S rRNA

Nearby chains

Chain d

40S ribosomal protein S19

Chain f

40S ribosomal protein S18