IL_8PJ1_114
3D structure
- PDB id
- 8PJ1 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of human 48S translation initiation complex in open codon scanning state (48S-1)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.4 Å
Loop
- Sequence
- GCUCAGCGUG*CCGUUGAACCC
- Length
- 21 nucleotides
- Bulged bases
- 8PJ1|1|A|U|1585, 8PJ1|1|A|G|1587
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
8PJ1|1|A|G|1541
8PJ1|1|A|C|1542
8PJ1|1|A|U|1543
8PJ1|1|A|C|1544
8PJ1|1|A|A|1545
8PJ1|1|A|G|1546
8PJ1|1|A|C|1547
8PJ1|1|A|G|1548
8PJ1|1|A|U|1549
8PJ1|1|A|G|1550
*
8PJ1|1|A|C|1582
8PJ1|1|A|C|1583
8PJ1|1|A|G|1584
8PJ1|1|A|U|1585
8PJ1|1|A|U|1586
8PJ1|1|A|G|1587
8PJ1|1|A|A|1588
8PJ1|1|A|A|1589
8PJ1|1|A|C|1590
8PJ1|1|A|C|1591
8PJ1|1|A|C|1592
Current chains
- Chain A
- 18S rRNA
Nearby chains
- Chain V
- 40S ribosomal protein S5
- Chain Y
- 40S ribosomal protein S16
- Chain Z
- 40S ribosomal protein S3
- Chain d
- 40S ribosomal protein S19
- Chain e
- 40S ribosomal protein S25
- Chain h
- 40S ribosomal protein S20
- Chain i
- 40S ribosomal protein S29
Coloring options: