IL_8PJ2_012

3D structure

PDB id

8PJ2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of human 48S translation initiation complex in AUG recognition state after eIF5-induced GTP hydrolysis by eIF2 (48S-2)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

U(OMU)CC(PSU)U(OMU)G*CAUUCGA

Length

15 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: OMU, PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8PJ2|1|A|U|115
8PJ2|1|A|OMU|116
8PJ2|1|A|C|117
8PJ2|1|A|C|118
8PJ2|1|A|PSU|119
8PJ2|1|A|U|120
8PJ2|1|A|OMU|121
8PJ2|1|A|G|122
*
8PJ2|1|A|C|342
8PJ2|1|A|A|343
8PJ2|1|A|U|344
8PJ2|1|A|U|345
8PJ2|1|A|C|346
8PJ2|1|A|G|347
8PJ2|1|A|A|348

Current chains

Chain A

18S rRNA

Nearby chains

Chain B

40S ribosomal protein S11

Chain C

40S ribosomal protein S4, X isoform

Chain R

40S ribosomal protein S8