IL_8PJ2_015

3D structure

PDB id

8PJ2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of human 48S translation initiation complex in AUG recognition state after eIF5-induced GTP hydrolysis by eIF2 (48S-2)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

UGGAUAAC*GCUAAUA(OMC)A

Length

17 nucleotides

Bulged bases

8PJ2|1|A|U|172

QA status

Modified nucleotides: OMC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8PJ2|1|A|U|144
8PJ2|1|A|G|145
8PJ2|1|A|G|146
8PJ2|1|A|A|147
8PJ2|1|A|U|148
8PJ2|1|A|A|149
8PJ2|1|A|A|150
8PJ2|1|A|C|151
*
8PJ2|1|A|G|167
8PJ2|1|A|C|168
8PJ2|1|A|U|169
8PJ2|1|A|A|170
8PJ2|1|A|A|171
8PJ2|1|A|U|172
8PJ2|1|A|A|173
8PJ2|1|A|OMC|174
8PJ2|1|A|A|175

Current chains

Chain A

18S rRNA

Nearby chains

Chain S

40S ribosomal protein S6

Chain T

40S ribosomal protein S24