IL_8PJ2_058

3D structure

PDB id

8PJ2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of human 48S translation initiation complex in AUG recognition state after eIF5-induced GTP hydrolysis by eIF2 (48S-2)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

CGAAG*CGUAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8PJ2_058 not in the Motif Atlas

Geometric match to IL_5J7L_037

Geometric discrepancy: 0.0982

The information below is about IL_5J7L_037

Detailed Annotation

tSH-tHW-tHS

Broad Annotation

No text annotation

Motif group

IL_17136.7

Basepair signature

cWW-tSH-tHW-tHS-cWW

Number of instances in this motif group

14

Unit IDs

8PJ2|1|A|C|1047
8PJ2|1|A|G|1048
8PJ2|1|A|A|1049
8PJ2|1|A|A|1050
8PJ2|1|A|G|1051
*
8PJ2|1|A|C|1067
8PJ2|1|A|G|1068
8PJ2|1|A|U|1069
8PJ2|1|A|A|1070
8PJ2|1|A|G|1071

Current chains

Chain A

18S rRNA

Nearby chains

Chain P

40S ribosomal protein S14

Chain Q

40S ribosomal protein S26

Chain z

Eukaryotic translation initiation factor 5