IL_8PJ2_087

3D structure

PDB id

8PJ2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of human 48S translation initiation complex in AUG recognition state after eIF5-induced GTP hydrolysis by eIF2 (48S-2)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

CCG*CAAG

Length

7 nucleotides

Bulged bases

8PJ2|1|A|C|1701, 8PJ2|1|A|A|1835

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8PJ2_087 not in the Motif Atlas

Homologous match to IL_8C3A_470

Geometric discrepancy: 0.0863

The information below is about IL_8C3A_470

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_61438.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

5

Unit IDs

8PJ2|1|A|C|1700
8PJ2|1|A|C|1701
8PJ2|1|A|G|1702
*
8PJ2|1|A|C|1833
8PJ2|1|A|A|1834
8PJ2|1|A|A|1835
8PJ2|1|A|G|1836

Current chains

Chain A

18S rRNA

Nearby chains

Chain 7

mRNA

Chain Q

40S ribosomal protein S26

Chain b

40S ribosomal protein S15

Chain q

Eukaryotic translation initiation factor 1A, X-chromosomal

Chain w

Transfer RNA; tRNA