IL_8PJ2_099

3D structure

PDB id

8PJ2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of human 48S translation initiation complex in AUG recognition state after eIF5-induced GTP hydrolysis by eIF2 (48S-2)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

GCA*UGC

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary: GCA,UGC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8PJ2_099 not in the Motif Atlas

Homologous match to IL_4WSM_380

Geometric discrepancy: 0.4317

The information below is about IL_4WSM_380

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8PJ2|1|w|G|2
8PJ2|1|w|C|3
8PJ2|1|w|A|4
*
8PJ2|1|w|U|69
8PJ2|1|w|G|70
8PJ2|1|w|C|71

Current chains

Chain w

Initiator Met-tRNA-i

Nearby chains

Chain r

Eukaryotic translation initiation factor 2 subunit 1

Chain t

Eukaryotic translation initiation factor 2 subunit 3