IL_8PJ3_005
3D structure
- PDB id
- 8PJ3 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of human 48S translation initiation complex upon transfer of initiator tRNA to eIF5B (48S-3)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.7 Å
Loop
- Sequence
- GAUUAAG*CGC
- Length
- 10 nucleotides
- Bulged bases
- 8PJ3|1|A|U|44, 8PJ3|1|A|A|46
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8PJ3_005 not in the Motif Atlas
- Homologous match to IL_8C3A_395
- Geometric discrepancy: 0.0955
- The information below is about IL_8C3A_395
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_80458.1
- Basepair signature
- cWW-L-R-L-cWW-L
- Number of instances in this motif group
- 2
Unit IDs
8PJ3|1|A|G|41
8PJ3|1|A|A|42
8PJ3|1|A|U|43
8PJ3|1|A|U|44
8PJ3|1|A|A|45
8PJ3|1|A|A|46
8PJ3|1|A|G|47
*
8PJ3|1|A|C|479
8PJ3|1|A|G|480
8PJ3|1|A|C|481
Current chains
- Chain A
- 18S rRNA
Nearby chains
- Chain 0
- Eukaryotic translation initiation factor 5B
- Chain E
- 40S ribosomal protein S23
Coloring options: