IL_8PJ3_012

3D structure

PDB id

8PJ3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of human 48S translation initiation complex upon transfer of initiator tRNA to eIF5B (48S-3)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

U(OMU)CC(PSU)U(OMU)G*CAUUCGA

Length

15 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: OMU, PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8PJ3|1|A|U|115
8PJ3|1|A|OMU|116
8PJ3|1|A|C|117
8PJ3|1|A|C|118
8PJ3|1|A|PSU|119
8PJ3|1|A|U|120
8PJ3|1|A|OMU|121
8PJ3|1|A|G|122
*
8PJ3|1|A|C|342
8PJ3|1|A|A|343
8PJ3|1|A|U|344
8PJ3|1|A|U|345
8PJ3|1|A|C|346
8PJ3|1|A|G|347
8PJ3|1|A|A|348

Current chains

Chain A

18S rRNA

Nearby chains

Chain B

40S ribosomal protein S11

Chain C

40S ribosomal protein S4, X isoform

Chain R

40S ribosomal protein S8