IL_8PJ3_016

3D structure

PDB id

8PJ3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of human 48S translation initiation complex upon transfer of initiator tRNA to eIF5B (48S-3)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

CUGAC*GGAUG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8PJ3_016 not in the Motif Atlas

Geometric match to IL_4WFL_001

Geometric discrepancy: 0.1966

The information below is about IL_4WFL_001

Detailed Annotation

Double sheared with non-canonical cWW

Broad Annotation

Double sheared

Motif group

IL_87767.1

Basepair signature

cWW-L-R-tSH-tHS-cWW

Number of instances in this motif group

16

Unit IDs

8PJ3|1|A|C|188
8PJ3|1|A|U|189
8PJ3|1|A|G|190
8PJ3|1|A|A|191
8PJ3|1|A|C|192
*
8PJ3|1|A|G|207
8PJ3|1|A|G|208
8PJ3|1|A|A|209
8PJ3|1|A|U|210
8PJ3|1|A|G|211

Current chains

Chain A

18S rRNA

Nearby chains

Chain R

40S ribosomal protein S8