IL_8PJ3_022

3D structure

PDB id

8PJ3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of human 48S translation initiation complex upon transfer of initiator tRNA to eIF5B (48S-3)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

UUUCGA*UG

Length

8 nucleotides

Bulged bases

8PJ3|1|A|C|369

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8PJ3_022 not in the Motif Atlas

Homologous match to IL_8P9A_392

Geometric discrepancy: 0.1694

The information below is about IL_8P9A_392

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_47074.2

Basepair signature

cWW-L-cWW-L

Number of instances in this motif group

4

Unit IDs

8PJ3|1|A|U|366
8PJ3|1|A|U|367
8PJ3|1|A|U|368
8PJ3|1|A|C|369
8PJ3|1|A|G|370
8PJ3|1|A|A|371
*
8PJ3|1|A|U|393
8PJ3|1|A|G|394

Current chains

Chain A

18S rRNA

Nearby chains

Chain B

40S ribosomal protein S11

Chain R

40S ribosomal protein S8

Chain y

Eukaryotic translation initiation factor 3 subunit C