3D structure

PDB id
8PJ3 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of human 48S translation initiation complex upon transfer of initiator tRNA to eIF5B (48S-3)
Experimental method
ELECTRON MICROSCOPY
Resolution
3.7 Å

Loop

Sequence
CAU*AAG
Length
6 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_8PJ3_025 not in the Motif Atlas
Homologous match to IL_8C3A_414
Geometric discrepancy: 0.114
The information below is about IL_8C3A_414
Detailed Annotation
Isolated non-canonical cWW pair
Broad Annotation
No text annotation
Motif group
IL_42997.1
Basepair signature
cWW-L-R-cWW
Number of instances in this motif group
18

Unit IDs

8PJ3|1|A|C|459
8PJ3|1|A|A|460
8PJ3|1|A|U|461
*
8PJ3|1|A|A|468
8PJ3|1|A|A|469
8PJ3|1|A|G|470

Current chains

Chain A
18S rRNA

Nearby chains

Chain 0
Eukaryotic translation initiation factor 5B
Chain S
40S ribosomal protein S6
Chain T
40S ribosomal protein S24

Coloring options:


Copyright 2025 BGSU RNA group. Page generated in 0.2046 s