IL_8PJ3_025
3D structure
- PDB id
- 8PJ3 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of human 48S translation initiation complex upon transfer of initiator tRNA to eIF5B (48S-3)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.7 Å
Loop
- Sequence
- CAU*AAG
- Length
- 6 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8PJ3_025 not in the Motif Atlas
- Homologous match to IL_8C3A_414
- Geometric discrepancy: 0.114
- The information below is about IL_8C3A_414
- Detailed Annotation
- Isolated non-canonical cWW pair
- Broad Annotation
- No text annotation
- Motif group
- IL_42997.1
- Basepair signature
- cWW-L-R-cWW
- Number of instances in this motif group
- 18
Unit IDs
8PJ3|1|A|C|459
8PJ3|1|A|A|460
8PJ3|1|A|U|461
*
8PJ3|1|A|A|468
8PJ3|1|A|A|469
8PJ3|1|A|G|470
Current chains
- Chain A
- 18S rRNA
Nearby chains
- Chain 0
- Eukaryotic translation initiation factor 5B
- Chain S
- 40S ribosomal protein S6
- Chain T
- 40S ribosomal protein S24
Coloring options: