IL_8PJ3_028
3D structure
- PDB id
- 8PJ3 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of human 48S translation initiation complex upon transfer of initiator tRNA to eIF5B (48S-3)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.7 Å
Loop
- Sequence
- UC*GGA
- Length
- 5 nucleotides
- Bulged bases
- 8PJ3|1|A|G|507
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8PJ3_028 not in the Motif Atlas
- Homologous match to IL_8C3A_417
- Geometric discrepancy: 0.099
- The information below is about IL_8C3A_417
- Detailed Annotation
- Single bulged G
- Broad Annotation
- No text annotation
- Motif group
- IL_00225.11
- Basepair signature
- cWW-L-cWW
- Number of instances in this motif group
- 46
Unit IDs
8PJ3|1|A|U|495
8PJ3|1|A|C|496
*
8PJ3|1|A|G|506
8PJ3|1|A|G|507
8PJ3|1|A|A|508
Current chains
- Chain A
- 18S rRNA
Nearby chains
- Chain 0
- Eukaryotic translation initiation factor 5B
- Chain C
- 40S ribosomal protein S4, X isoform
- Chain D
- 40S ribosomal protein S9
- Chain T
- 40S ribosomal protein S24
Coloring options: