IL_8PJ3_032
3D structure
- PDB id
- 8PJ3 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of human 48S translation initiation complex upon transfer of initiator tRNA to eIF5B (48S-3)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.7 Å
Loop
- Sequence
- GAG*CGAGGAUC
- Length
- 11 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8PJ3_032 not in the Motif Atlas
- Homologous match to IL_8C3A_420
- Geometric discrepancy: 0.1483
- The information below is about IL_8C3A_420
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_14882.1
- Basepair signature
- cWW-tSH-L-cWW-L-L-R-L
- Number of instances in this motif group
- 1
Unit IDs
8PJ3|1|A|G|563
8PJ3|1|A|A|564
8PJ3|1|A|G|565
*
8PJ3|1|A|C|585
8PJ3|1|A|G|586
8PJ3|1|A|A|587
8PJ3|1|A|G|588
8PJ3|1|A|G|589
8PJ3|1|A|A|590
8PJ3|1|A|U|591
8PJ3|1|A|C|592
Current chains
- Chain A
- 18S rRNA
Nearby chains
- Chain 0
- Eukaryotic translation initiation factor 5B
- Chain D
- 40S ribosomal protein S9
- Chain F
- Small ribosomal subunit protein eS30
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