IL_8PJ3_035

3D structure

PDB id

8PJ3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of human 48S translation initiation complex upon transfer of initiator tRNA to eIF5B (48S-3)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

GUC*GC

Length

5 nucleotides

Bulged bases

8PJ3|1|A|U|607

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8PJ3_035 not in the Motif Atlas

Homologous match to IL_4V88_414

Geometric discrepancy: 0.3364

The information below is about IL_4V88_414

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_83039.19

Basepair signature

cWW-L-cWW

Number of instances in this motif group

123

Unit IDs

8PJ3|1|A|G|606
8PJ3|1|A|U|607
8PJ3|1|A|C|608
*
8PJ3|1|A|G|635
8PJ3|1|A|C|636

Current chains

Chain A

18S rRNA

Nearby chains

Chain 7

mRNA

Chain D

40S ribosomal protein S9

Chain F

Small ribosomal subunit protein eS30

Chain Z

40S ribosomal protein S3