IL_8PJ3_052
3D structure
- PDB id
- 8PJ3 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of human 48S translation initiation complex upon transfer of initiator tRNA to eIF5B (48S-3)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.7 Å
Loop
- Sequence
- GGAC*GUUUU
- Length
- 9 nucleotides
- Bulged bases
- 8PJ3|1|A|U|1016
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8PJ3_052 not in the Motif Atlas
- Geometric match to IL_4V88_429
- Geometric discrepancy: 0.1398
- The information below is about IL_4V88_429
- Detailed Annotation
- Tandem non-canonical cWW pairs
- Broad Annotation
- No text annotation
- Motif group
- IL_30621.4
- Basepair signature
- cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 66
Unit IDs
8PJ3|1|A|G|924
8PJ3|1|A|G|925
8PJ3|1|A|A|926
8PJ3|1|A|C|927
*
8PJ3|1|A|G|1014
8PJ3|1|A|U|1015
8PJ3|1|A|U|1016
8PJ3|1|A|U|1017
8PJ3|1|A|U|1018
Current chains
- Chain A
- 18S rRNA
Nearby chains
- Chain H
- 40S ribosomal protein S27
- Chain I
- 40S ribosomal protein S13
- Chain J
- 40S ribosomal protein S15a
- Chain y
- Eukaryotic translation initiation factor 3 subunit C
Coloring options: