IL_8PJ3_057

3D structure

PDB id

8PJ3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of human 48S translation initiation complex upon transfer of initiator tRNA to eIF5B (48S-3)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

AGGUUC*GUU

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8PJ3_057 not in the Motif Atlas

Geometric match to IL_4V88_435

Geometric discrepancy: 0.145

The information below is about IL_4V88_435

Detailed Annotation

Other IL

Broad Annotation

Other IL

Motif group

IL_22046.1

Basepair signature

cWW-L-cWW-L-cWW-L

Number of instances in this motif group

2

Unit IDs

8PJ3|1|A|A|1042
8PJ3|1|A|G|1043
8PJ3|1|A|G|1044
8PJ3|1|A|U|1045
8PJ3|1|A|U|1046
8PJ3|1|A|C|1047
*
8PJ3|1|A|G|1071
8PJ3|1|A|U|1072
8PJ3|1|A|U|1073

Current chains

Chain A

18S rRNA

Nearby chains

Chain P

40S ribosomal protein S14

Chain Q

40S ribosomal protein S26