IL_8PJ3_074
3D structure
- PDB id
- 8PJ3 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of human 48S translation initiation complex upon transfer of initiator tRNA to eIF5B (48S-3)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.7 Å
Loop
- Sequence
- UGCAU*AUG
- Length
- 8 nucleotides
- Bulged bases
- 8PJ3|1|A|C|1331
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8PJ3_074 not in the Motif Atlas
- Geometric match to IL_4LFB_044
- Geometric discrepancy: 0.1107
- The information below is about IL_4LFB_044
- Detailed Annotation
- Isolated cWS basepair
- Broad Annotation
- No text annotation
- Motif group
- IL_82453.1
- Basepair signature
- cWW-L-R-L-cWW
- Number of instances in this motif group
- 5
Unit IDs
8PJ3|1|A|U|1329
8PJ3|1|A|G|1330
8PJ3|1|A|C|1331
8PJ3|1|A|A|1332
8PJ3|1|A|U|1333
*
8PJ3|1|A|A|1498
8PJ3|1|A|U|1499
8PJ3|1|A|G|1500
Current chains
- Chain A
- 18S rRNA
Nearby chains
- Chain 7
- mRNA
- Chain Z
- 40S ribosomal protein S3
- Chain a
- 40S ribosomal protein S10
- Chain h
- 40S ribosomal protein S20
- Chain i
- 40S ribosomal protein S29
- Chain q
- Eukaryotic translation initiation factor 1A, X-chromosomal
Coloring options: