IL_8PJ3_086
3D structure
- PDB id
- 8PJ3 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of human 48S translation initiation complex upon transfer of initiator tRNA to eIF5B (48S-3)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.7 Å
Loop
- Sequence
- GGGAUCG*CAUGAAC
- Length
- 14 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8PJ3_086 not in the Motif Atlas
- Homologous match to IL_8C3A_469
- Geometric discrepancy: 0.1065
- The information below is about IL_8C3A_469
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_10092.1
- Basepair signature
- cWW-tSH-tSH-L-R-cWW-L-R-cWW
- Number of instances in this motif group
- 1
Unit IDs
8PJ3|1|A|G|1604
8PJ3|1|A|G|1605
8PJ3|1|A|G|1606
8PJ3|1|A|A|1607
8PJ3|1|A|U|1608
8PJ3|1|A|C|1609
8PJ3|1|A|G|1610
*
8PJ3|1|A|C|1629
8PJ3|1|A|A|1630
8PJ3|1|A|U|1631
8PJ3|1|A|G|1632
8PJ3|1|A|A|1633
8PJ3|1|A|A|1634
8PJ3|1|A|C|1635
Current chains
- Chain A
- 18S rRNA
Nearby chains
- Chain V
- 40S ribosomal protein S5
- Chain d
- 40S ribosomal protein S19
- Chain e
- 40S ribosomal protein S25
- Chain f
- 40S ribosomal protein S18
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