IL_8PJ3_087
3D structure
- PDB id
- 8PJ3 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of human 48S translation initiation complex upon transfer of initiator tRNA to eIF5B (48S-3)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.7 Å
Loop
- Sequence
- CCG*CAAG
- Length
- 7 nucleotides
- Bulged bases
- 8PJ3|1|A|C|1701, 8PJ3|1|A|A|1835
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8PJ3_087 not in the Motif Atlas
- Homologous match to IL_8C3A_470
- Geometric discrepancy: 0.073
- The information below is about IL_8C3A_470
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_61438.2
- Basepair signature
- cWW-L-cWW
- Number of instances in this motif group
- 5
Unit IDs
8PJ3|1|A|C|1700
8PJ3|1|A|C|1701
8PJ3|1|A|G|1702
*
8PJ3|1|A|C|1833
8PJ3|1|A|A|1834
8PJ3|1|A|A|1835
8PJ3|1|A|G|1836
Current chains
- Chain A
- 18S rRNA
Nearby chains
- Chain 7
- mRNA
- Chain Q
- 40S ribosomal protein S26
- Chain b
- 40S ribosomal protein S15
- Chain q
- Eukaryotic translation initiation factor 1A, X-chromosomal
- Chain w
- Transfer RNA; tRNA
Coloring options: