IL_8PJ3_103

3D structure

PDB id

8PJ3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of human 48S translation initiation complex upon transfer of initiator tRNA to eIF5B (48S-3)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

UGU*AG(A2M)

Length

6 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: A2M

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8PJ3_103 not in the Motif Atlas

Homologous match to IL_8P9A_384

Geometric discrepancy: 0.2516

The information below is about IL_8P9A_384

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_23751.1

Basepair signature

cWW-L-R-cWW

Number of instances in this motif group

5

Unit IDs

8PJ3|1|A|U|152
8PJ3|1|A|G|153
8PJ3|1|A|U|154
*
8PJ3|1|A|A|164
8PJ3|1|A|G|165
8PJ3|1|A|A2M|166

Current chains

Chain A

18S rRNA

Nearby chains

Chain S

40S ribosomal protein S6

Chain T

40S ribosomal protein S24