IL_8PJ3_107

3D structure

PDB id

8PJ3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of human 48S translation initiation complex upon transfer of initiator tRNA to eIF5B (48S-3)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

GGAGUAUGG*CUGAAAC

Length

16 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8PJ3|1|A|G|1168
8PJ3|1|A|G|1169
8PJ3|1|A|A|1170
8PJ3|1|A|G|1171
8PJ3|1|A|U|1172
8PJ3|1|A|A|1173
8PJ3|1|A|U|1174
8PJ3|1|A|G|1175
8PJ3|1|A|G|1176
*
8PJ3|1|A|C|1185
8PJ3|1|A|U|1186
8PJ3|1|A|G|1187
8PJ3|1|A|A|1188
8PJ3|1|A|A|1189
8PJ3|1|A|A|1190
8PJ3|1|A|C|1191

Current chains

Chain A

18S rRNA

Nearby chains

Chain 9

60S ribosomal protein L41

Chain E

40S ribosomal protein S23