IL_8PJ4_023

3D structure

PDB id

8PJ4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of human 48S translation initiation complex after eIF5 release (48S-4)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

UUUCGA*UG

Length

8 nucleotides

Bulged bases

8PJ4|1|A|U|368, 8PJ4|1|A|C|369

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8PJ4_023 not in the Motif Atlas

Geometric match to IL_5Y58_001

Geometric discrepancy: 0.3552

The information below is about IL_5Y58_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_37738.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

2

Unit IDs

8PJ4|1|A|U|366
8PJ4|1|A|U|367
8PJ4|1|A|U|368
8PJ4|1|A|C|369
8PJ4|1|A|G|370
8PJ4|1|A|A|371
*
8PJ4|1|A|U|393
8PJ4|1|A|G|394

Current chains

Chain A

18S rRNA

Nearby chains

Chain B

40S ribosomal protein S11

Chain R

40S ribosomal protein S8