IL_8PJ4_031

3D structure

PDB id

8PJ4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of human 48S translation initiation complex after eIF5 release (48S-4)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GAC*GGC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8PJ4_031 not in the Motif Atlas

Geometric match to IL_5W1H_001

Geometric discrepancy: 0.3262

The information below is about IL_5W1H_001

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_71421.2

Basepair signature

cWW-cWW

Number of instances in this motif group

35

Unit IDs

8PJ4|1|A|G|535
8PJ4|1|A|A|536
8PJ4|1|A|C|537
*
8PJ4|1|A|G|546
8PJ4|1|A|G|547
8PJ4|1|A|C|548

Current chains

Chain A

18S rRNA

Nearby chains

Chain 1

Eukaryotic translation initiation factor 3 subunit B

Chain F

Small ribosomal subunit protein eS30