IL_8PJ4_099
3D structure
- PDB id
- 8PJ4 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of human 48S translation initiation complex after eIF5 release (48S-4)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- GUUAU*ACGUC
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8PJ4_099 not in the Motif Atlas
- Geometric match to IL_8VMB_003
- Geometric discrepancy: 0.3507
- The information below is about IL_8VMB_003
- Detailed Annotation
- Triple non-canonical cWW pairs
- Broad Annotation
- No text annotation
- Motif group
- IL_71154.3
- Basepair signature
- cWW-cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 17
Unit IDs
8PJ4|1|A|G|108
8PJ4|1|A|U|109
8PJ4|1|A|U|110
8PJ4|1|A|A|111
8PJ4|1|A|U|112
*
8PJ4|1|A|A|349
8PJ4|1|A|C|350
8PJ4|1|A|G|351
8PJ4|1|A|U|352
8PJ4|1|A|C|353
Current chains
- Chain A
- 18S rRNA
Nearby chains
- Chain B
- 40S ribosomal protein S11
- Chain C
- 40S ribosomal protein S4, X isoform
- Chain R
- 40S ribosomal protein S8
Coloring options: