IL_8PJ5_026

3D structure

PDB id

8PJ5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of human 48S translation initiation complex after eIF2 release prior 60S subunit joining (48S-5)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CAU*AAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8PJ5_026 not in the Motif Atlas

Homologous match to IL_8C3A_414

Geometric discrepancy: 0.0736

The information below is about IL_8C3A_414

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_42997.1

Basepair signature

cWW-L-R-cWW

Number of instances in this motif group

18

Unit IDs

8PJ5|1|A|C|459
8PJ5|1|A|A|460
8PJ5|1|A|U|461
*
8PJ5|1|A|A|468
8PJ5|1|A|A|469
8PJ5|1|A|G|470

Current chains

Chain A

18S rRNA

Nearby chains

Chain 0

Eukaryotic translation initiation factor 5B

Chain S

40S ribosomal protein S6