IL_8PJ5_033

3D structure

PDB id

8PJ5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of human 48S translation initiation complex after eIF2 release prior 60S subunit joining (48S-5)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

UCCA*UUAA

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8PJ5_033 not in the Motif Atlas

Geometric match to IL_4V88_429

Geometric discrepancy: 0.3892

The information below is about IL_4V88_429

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_30621.4

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

66

Unit IDs

8PJ5|1|A|U|566
8PJ5|1|A|C|567
8PJ5|1|A|C|568
8PJ5|1|A|A|569
*
8PJ5|1|A|U|581
8PJ5|1|A|U|582
8PJ5|1|A|A|583
8PJ5|1|A|A|584

Current chains

Chain A

18S rRNA

Nearby chains

Chain 0

Eukaryotic translation initiation factor 5B

Chain D

40S ribosomal protein S9

Chain T

40S ribosomal protein S24