IL_8PJ5_067
3D structure
- PDB id
- 8PJ5 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of human 48S translation initiation complex after eIF2 release prior 60S subunit joining (48S-5)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- CCU*GCG
- Length
- 6 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8PJ5_067 not in the Motif Atlas
- Homologous match to IL_4V88_444
- Geometric discrepancy: 0.1124
- The information below is about IL_4V88_444
- Detailed Annotation
- Isolated non-canonical cWW pair
- Broad Annotation
- No text annotation
- Motif group
- IL_44258.2
- Basepair signature
- cWW-cWW-cWW
- Number of instances in this motif group
- 301
Unit IDs
8PJ5|1|A|C|1230
8PJ5|1|A|C|1231
8PJ5|1|A|U|1232
*
8PJ5|1|A|G|1526
8PJ5|1|A|C|1527
8PJ5|1|A|G|1528
Current chains
- Chain A
- 18S rRNA
Nearby chains
- Chain Y
- 40S ribosomal protein S16
- Chain b
- 40S ribosomal protein S15
- Chain d
- 40S ribosomal protein S19
- Chain f
- 40S ribosomal protein S18
- Chain h
- 40S ribosomal protein S20
- Chain w
- Transfer RNA; tRNA
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