IL_8PJ6_035

3D structure

PDB id

8PJ6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of human 48S translation initiation complex with initiator tRNA, eIF1A and eIF3 (off-pathway)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GUC*GC

Length

5 nucleotides

Bulged bases

8PJ6|1|A|U|607

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8PJ6_035 not in the Motif Atlas

Geometric match to IL_3D2V_001

Geometric discrepancy: 0.244

The information below is about IL_3D2V_001

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_97561.3

Basepair signature

cWW-L-cWW

Number of instances in this motif group

147

Unit IDs

8PJ6|1|A|G|606
8PJ6|1|A|U|607
8PJ6|1|A|C|608
*
8PJ6|1|A|G|635
8PJ6|1|A|C|636

Current chains

Chain A

18S rRNA

Nearby chains

Chain 7

mRNA

Chain D

40S ribosomal protein S9

Chain F

40S ribosomal protein S30

Chain Z

40S ribosomal protein S3