IL_8PJ6_108

3D structure

PDB id

8PJ6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of human 48S translation initiation complex with initiator tRNA, eIF1A and eIF3 (off-pathway)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

ACAGGA*UU

Length

8 nucleotides

Bulged bases

8PJ6|1|A|G|1285

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8PJ6_108 not in the Motif Atlas

Geometric match to IL_4V9F_009

Geometric discrepancy: 0.3577

The information below is about IL_4V9F_009

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_10396.1

Basepair signature

cWW-L-cWW-L-L

Number of instances in this motif group

6

Unit IDs

8PJ6|1|A|A|1282
8PJ6|1|A|C|1283
8PJ6|1|A|A|1284
8PJ6|1|A|G|1285
8PJ6|1|A|G|1286
8PJ6|1|A|A|1287
*
8PJ6|1|A|U|1314
8PJ6|1|A|U|1315

Current chains

Chain A

18S rRNA

Nearby chains

Chain a

40S ribosomal protein S10

Chain k

Ubiquitin

Chain m

40S ribosomal protein S12