IL_8PK0_011

3D structure

PDB id

8PK0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

human mitoribosomal large subunit assembly intermediate 1 with GTPBP10-GTPBP7

Experimental method

ELECTRON MICROSCOPY

Resolution

3.03 Å

Loop

Sequence

AC*GAU

Length

5 nucleotides

Bulged bases

8PK0|1|A|A|1974

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8PK0_011 not in the Motif Atlas

Homologous match to IL_5J7L_261

Geometric discrepancy: 0.1066

The information below is about IL_5J7L_261

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_31462.7

Basepair signature

cWW-L-cWW

Number of instances in this motif group

132

Unit IDs

8PK0|1|A|A|1929
8PK0|1|A|C|1930
*
8PK0|1|A|G|1973
8PK0|1|A|A|1974
8PK0|1|A|U|1975

Current chains

Chain A

16S rRNA + pre-H68-71 segment

Nearby chains

Chain D

39S ribosomal protein L2, mitochondrial