IL_8PK0_036

3D structure

PDB id

8PK0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

human mitoribosomal large subunit assembly intermediate 1 with GTPBP10-GTPBP7

Experimental method

ELECTRON MICROSCOPY

Resolution

3.03 Å

Loop

Sequence

CA*UACG

Length

6 nucleotides

Bulged bases

8PK0|1|A|A|3090, 8PK0|1|A|C|3091

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8PK0_036 not in the Motif Atlas

Homologous match to IL_5J7L_341

Geometric discrepancy: 0.146

The information below is about IL_5J7L_341

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_42626.2

Basepair signature

cWW-cWW

Number of instances in this motif group

14

Unit IDs

8PK0|1|A|C|3030
8PK0|1|A|A|3031
*
8PK0|1|A|U|3089
8PK0|1|A|A|3090
8PK0|1|A|C|3091
8PK0|1|A|G|3092

Current chains

Chain A

16S rRNA + pre-H68-71 segment

Nearby chains

Chain E

39S ribosomal protein L3, mitochondrial

Chain K

39S ribosomal protein L13, mitochondrial