IL_8PK0_039

3D structure

PDB id

8PK0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

human mitoribosomal large subunit assembly intermediate 1 with GTPBP10-GTPBP7

Experimental method

ELECTRON MICROSCOPY

Resolution

3.03 Å

Loop

Sequence

GAC*GUC

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary: GAC,GUC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8PK0_039 not in the Motif Atlas

Geometric match to IL_3NJ7_004

Geometric discrepancy: 0.2323

The information below is about IL_3NJ7_004

Detailed Annotation

Isolated near basepair

Broad Annotation

Isolated near basepair

Motif group

IL_42997.4

Basepair signature

cWW-cWS-cWW

Number of instances in this motif group

21

Unit IDs

8PK0|1|A|G|3106
8PK0|1|A|A|3107
8PK0|1|A|C|3108
*
8PK0|1|A|G|3122
8PK0|1|A|U|3123
8PK0|1|A|C|3124

Current chains

Chain A

16S rRNA + pre-H68-71 segment

Nearby chains

Chain D

39S ribosomal protein L2, mitochondrial

Chain z

Mitochondrial ribosome-associated GTPase 1