IL_8PK0_052
3D structure
- PDB id
- 8PK0 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- human mitoribosomal large subunit assembly intermediate 1 with GTPBP10-GTPBP7
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.03 Å
Loop
- Sequence
- UAAG*CAAA
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8PK0_052 not in the Motif Atlas
- Geometric match to IL_8C3A_404
- Geometric discrepancy: 0.2444
- The information below is about IL_8C3A_404
- Detailed Annotation
- Double sheared
- Broad Annotation
- Double sheared
- Motif group
- IL_09705.13
- Basepair signature
- cWW-tSH-tHS-cWW
- Number of instances in this motif group
- 34
Unit IDs
8PK0|1|A|U|2888
8PK0|1|A|A|2889
8PK0|1|A|A|2890
8PK0|1|A|G|2891
*
8PK0|1|A|C|2903
8PK0|1|A|A|2904
8PK0|1|A|A|2905
8PK0|1|A|A|2906
Current chains
- Chain A
- 16S rRNA + pre-H68-71 segment
Nearby chains
- Chain 3
- 39S ribosomal protein L35, mitochondrial
- Chain 6
- 39S ribosomal protein L38, mitochondrial
- Chain P
- 39S ribosomal protein L18, mitochondrial
- Chain W
- 39S ribosomal protein L27, mitochondrial
Coloring options: