IL_8PNN_034

3D structure

PDB id

8PNN (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S yeast ribosome in complex with Bromolissoclimide

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

CGUAU*AAG

Length

8 nucleotides

Bulged bases

8PNN|1|1|A|1103

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8PNN_034 not in the Motif Atlas

Homologous match to IL_8P9A_264

Geometric discrepancy: 0.2628

The information below is about IL_8P9A_264

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_25463.1

Basepair signature

cWW-L-cWW-L-L

Number of instances in this motif group

2

Unit IDs

8PNN|1|1|C|977
8PNN|1|1|G|978
8PNN|1|1|U|979
8PNN|1|1|A|980
8PNN|1|1|U|981
*
8PNN|1|1|A|1102
8PNN|1|1|A|1103
8PNN|1|1|G|1104

Current chains

Chain 1

25S ribosomal RNA

Nearby chains

Chain AC

60S ribosomal protein L29

Chain o

60S ribosomal protein L7-A

Chain y

60S ribosomal protein L18-A