IL_8PNN_041

3D structure

PDB id

8PNN (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S yeast ribosome in complex with Bromolissoclimide

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

UUCCG*UGA

Length

8 nucleotides

Bulged bases

8PNN|1|1|C|1016, 8PNN|1|1|C|1017

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8PNN_041 not in the Motif Atlas

Homologous match to IL_8P9A_271

Geometric discrepancy: 0.2781

The information below is about IL_8P9A_271

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_11415.1

Basepair signature

cWW-L-R-L-cWW-L

Number of instances in this motif group

1

Unit IDs

8PNN|1|1|U|1014
8PNN|1|1|U|1015
8PNN|1|1|C|1016
8PNN|1|1|C|1017
8PNN|1|1|G|1018
*
8PNN|1|1|U|1034
8PNN|1|1|G|1035
8PNN|1|1|A|1036

Current chains

Chain 1

25S ribosomal RNA

Nearby chains

Chain i

Suppressor protein STM1

Chain m

60S ribosomal protein L5

Chain s

Large ribosomal subunit protein uL5B