IL_8PNN_045

3D structure

PDB id

8PNN (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S yeast ribosome in complex with Bromolissoclimide

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

UUU*AGA

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8PNN_045 not in the Motif Atlas

Homologous match to IL_8P9A_275

Geometric discrepancy: 0.0733

The information below is about IL_8P9A_275

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8PNN|1|1|U|1123
8PNN|1|1|U|1124
8PNN|1|1|U|1125
*
8PNN|1|1|A|1133
8PNN|1|1|G|1134
8PNN|1|1|A|1135

Current chains

Chain 1

25S ribosomal RNA

Nearby chains

Chain 2

60S ribosomal protein L21-A

Chain 3

5S ribosomal RNA; 5S rRNA

Chain AC

60S ribosomal protein L29

Chain r

60S ribosomal protein L10