IL_8PNN_064

3D structure

PDB id

8PNN (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S yeast ribosome in complex with Bromolissoclimide

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

GAUA*UGC

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8PNN_064 not in the Motif Atlas

Homologous match to IL_8P9A_292

Geometric discrepancy: 0.1177

The information below is about IL_8P9A_292

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_15698.3

Basepair signature

cWW-L-R-L-cWW

Number of instances in this motif group

10

Unit IDs

8PNN|1|1|G|1618
8PNN|1|1|A|1619
8PNN|1|1|U|1620
8PNN|1|1|A|1621
*
8PNN|1|1|U|1824
8PNN|1|1|G|1825
8PNN|1|1|C|1826

Current chains

Chain 1

25S ribosomal RNA

Nearby chains

Chain 4

5.8S ribosomal RNA; 5.8S rRNA

Chain AL

60S ribosomal protein L38