IL_8PNN_079
3D structure
- PDB id
- 8PNN (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 80S yeast ribosome in complex with Bromolissoclimide
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.9 Å
Loop
- Sequence
- CGUAAC*GGAUAAG
- Length
- 13 nucleotides
- Bulged bases
- 8PNN|1|1|U|1931
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8PNN_079 not in the Motif Atlas
- Homologous match to IL_8P9A_307
- Geometric discrepancy: 0.0681
- The information below is about IL_8P9A_307
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_47346.2
- Basepair signature
- cWW-tSH-L-R-tHH-tHS-cWW
- Number of instances in this motif group
- 7
Unit IDs
8PNN|1|1|C|1918
8PNN|1|1|G|1919
8PNN|1|1|U|1920
8PNN|1|1|A|1921
8PNN|1|1|A|1922
8PNN|1|1|C|1923
*
8PNN|1|1|G|1928
8PNN|1|1|G|1929
8PNN|1|1|A|1930
8PNN|1|1|U|1931
8PNN|1|1|A|1932
8PNN|1|1|A|1933
8PNN|1|1|G|1934
Current chains
- Chain 1
- 25S ribosomal RNA
Nearby chains
- Chain A
- Small subunit ribosomal RNA; SSU rRNA
- Chain AO
- Large ribosomal subunit protein eL41B
- Chain AQ
- 60S ribosomal protein L43-A
- Chain z
- 60S ribosomal protein L19-A
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