IL_8PNN_083

3D structure

PDB id

8PNN (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S yeast ribosome in complex with Bromolissoclimide

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

CU*GAG

Length

5 nucleotides

Bulged bases

8PNN|1|1|A|2324

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8PNN_083 not in the Motif Atlas

Homologous match to IL_8CRE_087

Geometric discrepancy: 0.0677

The information below is about IL_8CRE_087

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_31462.6

Basepair signature

cWW-L-cWW

Number of instances in this motif group

130

Unit IDs

8PNN|1|1|C|2128
8PNN|1|1|U|2129
*
8PNN|1|1|G|2323
8PNN|1|1|A|2324
8PNN|1|1|G|2325

Current chains

Chain 1

25S ribosomal RNA

Nearby chains

Chain AO

Large ribosomal subunit protein eL41B