IL_8PNN_109

3D structure

PDB id

8PNN (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S yeast ribosome in complex with Bromolissoclimide

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

CU*AACG

Length

6 nucleotides

Bulged bases

8PNN|1|1|A|2941, 8PNN|1|1|C|2942

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8PNN_109 not in the Motif Atlas

Homologous match to IL_8CRE_117

Geometric discrepancy: 0.0908

The information below is about IL_8CRE_117

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_42626.2

Basepair signature

cWW-cWW

Number of instances in this motif group

14

Unit IDs

8PNN|1|1|C|2881
8PNN|1|1|U|2882
*
8PNN|1|1|A|2940
8PNN|1|1|A|2941
8PNN|1|1|C|2942
8PNN|1|1|G|2943

Current chains

Chain 1

25S ribosomal RNA

Nearby chains

Chain 6

60S ribosomal protein L23-A

Chain k

60S ribosomal protein L3