IL_8PNN_111
3D structure
- PDB id
- 8PNN (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 80S yeast ribosome in complex with Bromolissoclimide
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.9 Å
Loop
- Sequence
- CAUA*UAAGCG
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8PNN_111 not in the Motif Atlas
- Geometric match to IL_8P9A_338
- Geometric discrepancy: 0.0643
- The information below is about IL_8P9A_338
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_07469.2
- Basepair signature
- cWW-tSH-cWW-cSH-R-cWW
- Number of instances in this motif group
- 3
Unit IDs
8PNN|1|1|C|2889
8PNN|1|1|A|2890
8PNN|1|1|U|2891
8PNN|1|1|A|2892
*
8PNN|1|1|U|2909
8PNN|1|1|A|2910
8PNN|1|1|A|2911
8PNN|1|1|G|2912
8PNN|1|1|C|2913
8PNN|1|1|G|2914
Current chains
- Chain 1
- 25S ribosomal RNA
Nearby chains
- Chain 6
- 60S ribosomal protein L23-A
- Chain AN
- Ubiquitin-60S ribosomal protein L40
- Chain k
- 60S ribosomal protein L3
- Chain q
- 60S ribosomal protein L9-A
- Chain w
- 60S ribosomal protein L16-A
Coloring options: