IL_8PNN_134

3D structure

PDB id

8PNN (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S yeast ribosome in complex with Bromolissoclimide

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

GUA*UC

Length

5 nucleotides

Bulged bases

8PNN|1|1|U|3341

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8PNN_134 not in the Motif Atlas

Homologous match to IL_8CRE_140

Geometric discrepancy: 0.3112

The information below is about IL_8CRE_140

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_89505.4

Basepair signature

cWW-L-cWW

Number of instances in this motif group

117

Unit IDs

8PNN|1|1|G|3340
8PNN|1|1|U|3341
8PNN|1|1|A|3342
*
8PNN|1|1|U|3363
8PNN|1|1|C|3364

Current chains

Chain 1

25S ribosomal RNA

Nearby chains

Chain 7

60S ribosomal protein L24-A