IL_8PNN_135

3D structure

PDB id

8PNN (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S yeast ribosome in complex with Bromolissoclimide

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

AGAG*CGAU

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8PNN_135 not in the Motif Atlas

Homologous match to IL_8CRE_141

Geometric discrepancy: 0.2428

The information below is about IL_8CRE_141

Detailed Annotation

Double sheared

Broad Annotation

Double sheared

Motif group

IL_09705.15

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

34

Unit IDs

8PNN|1|1|A|3342
8PNN|1|1|G|3343
8PNN|1|1|A|3344
8PNN|1|1|G|3345
*
8PNN|1|1|C|3360
8PNN|1|1|G|3361
8PNN|1|1|A|3362
8PNN|1|1|U|3363

Current chains

Chain 1

25S ribosomal RNA

Nearby chains

Chain J

40S ribosomal protein S8-A

Chain z

60S ribosomal protein L19-A