IL_8PNN_175

3D structure

PDB id

8PNN (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S yeast ribosome in complex with Bromolissoclimide

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

GUC*GC

Length

5 nucleotides

Bulged bases

8PNN|1|A|U|558

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8PNN_175 not in the Motif Atlas

Homologous match to IL_8CRE_422

Geometric discrepancy: 0.2352

The information below is about IL_8CRE_422

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_89505.4

Basepair signature

cWW-L-cWW

Number of instances in this motif group

117

Unit IDs

8PNN|1|A|G|557
8PNN|1|A|U|558
8PNN|1|A|C|559
*
8PNN|1|A|G|586
8PNN|1|A|C|587

Current chains

Chain A

16S ribosomal RNA

Nearby chains

Chain E

Small ribosomal subunit protein uS3

Chain Y

40S ribosomal protein S23-A

Chain f

40S ribosomal protein S30-A

Chain i

Suppressor protein STM1