IL_8PNN_177

3D structure

PDB id

8PNN (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S yeast ribosome in complex with Bromolissoclimide

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

GUUAAAA*UC

Length

9 nucleotides

Bulged bases

8PNN|1|A|A|619

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8PNN_177 not in the Motif Atlas

Homologous match to IL_8P9A_405

Geometric discrepancy: 0.099

The information below is about IL_8P9A_405

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_38186.6

Basepair signature

cWW-L-cWW-L-L-R

Number of instances in this motif group

4

Unit IDs

8PNN|1|A|G|616
8PNN|1|A|U|617
8PNN|1|A|U|618
8PNN|1|A|A|619
8PNN|1|A|A|620
8PNN|1|A|A|621
8PNN|1|A|A|622
*
8PNN|1|A|U|1104
8PNN|1|A|C|1105

Current chains

Chain A

16S ribosomal RNA

Nearby chains

Chain Y

40S ribosomal protein S23-A

Chain b

Small ribosomal subunit protein eS26B