IL_8PNN_181

3D structure

PDB id

8PNN (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S yeast ribosome in complex with Bromolissoclimide

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

AC*GAAU

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8PNN_181 not in the Motif Atlas

Homologous match to IL_8CRE_428

Geometric discrepancy: 0.127

The information below is about IL_8CRE_428

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_68140.4

Basepair signature

cWW-cSH-cWW

Number of instances in this motif group

18

Unit IDs

8PNN|1|A|A|746
8PNN|1|A|C|747
*
8PNN|1|A|G|802
8PNN|1|A|A|803
8PNN|1|A|A|804
8PNN|1|A|U|805

Current chains

Chain A

16S ribosomal RNA

Nearby chains

Chain I

40S ribosomal protein S7-A

Chain M

40S ribosomal protein S11-A

Chain X

40S ribosomal protein S22-A

Chain Y

40S ribosomal protein S23-A