IL_8PNN_185

3D structure

PDB id

8PNN (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S yeast ribosome in complex with Bromolissoclimide

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

UGG*CCA

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8PNN_185 not in the Motif Atlas

Geometric match to IL_406D_004

Geometric discrepancy: 0.2101

The information below is about IL_406D_004

Detailed Annotation

Isolated cWH basepair

Broad Annotation

No text annotation

Motif group

IL_10167.6

Basepair signature

cWW-cHW-cWW

Number of instances in this motif group

51

Unit IDs

8PNN|1|A|U|822
8PNN|1|A|G|823
8PNN|1|A|G|824
*
8PNN|1|A|C|848
8PNN|1|A|C|849
8PNN|1|A|A|850

Current chains

Chain A

16S ribosomal RNA

Nearby chains

Chain M

40S ribosomal protein S11-A

Chain z

60S ribosomal protein L19-A