IL_8PNN_196

3D structure

PDB id

8PNN (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S yeast ribosome in complex with Bromolissoclimide

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

GUG*CC

Length

5 nucleotides

Bulged bases

8PNN|1|A|U|1052

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8PNN_196 not in the Motif Atlas

Homologous match to IL_8P9A_427

Geometric discrepancy: 0.5341

The information below is about IL_8P9A_427

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_89505.4

Basepair signature

cWW-L-cWW

Number of instances in this motif group

117

Unit IDs

8PNN|1|A|G|1051
8PNN|1|A|U|1052
8PNN|1|A|G|1053
*
8PNN|1|A|C|1066
8PNN|1|A|C|1067

Current chains

Chain A

16S ribosomal RNA

Nearby chains

Chain C

40S ribosomal protein S1-A

Chain c

40S ribosomal protein S27-A