IL_8PNN_202

3D structure

PDB id

8PNN (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S yeast ribosome in complex with Bromolissoclimide

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

GG*CAC

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8PNN_202 not in the Motif Atlas

Homologous match to IL_8P9A_433

Geometric discrepancy: 0.1156

The information below is about IL_8P9A_433

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_51454.3

Basepair signature

cWW-cSH-cWW

Number of instances in this motif group

45

Unit IDs

8PNN|1|A|G|1178
8PNN|1|A|G|1179
*
8PNN|1|A|C|1459
8PNN|1|A|A|1460
8PNN|1|A|C|1461

Current chains

Chain A

16S ribosomal RNA

Nearby chains

Chain Q

40S ribosomal protein S15

Chain T

40S ribosomal protein S18-A

Chain i

Suppressor protein STM1